2024 Journal Article Atrogin-1 promotes muscle homeostasis by regulating levels of endoplasmic reticulum chaperone BiPRuparelia, Avnika A., Montandon, Margo, Merriner, Jo, Huang, Cheng, Wong, Siew Fen Lisa, Sonntag, Carmen, Hardee, Justin P., Lynch, Gordon S., Miles, Lee B., Siegel, Ashley, Hall, Thomas E., Schittenhelm, Ralf B. and Currie, Peter D. (2024). Atrogin-1 promotes muscle homeostasis by regulating levels of endoplasmic reticulum chaperone BiP. JCI Insight, 9 (8) e167578. doi: 10.1172/jci.insight.167578 Atrogin-1 promotes muscle homeostasis by regulating levels of endoplasmic reticulum chaperone BiP |
2024 Journal Article KBTBD13 is an actin-binding protein that modulates muscle kineticsde Winter, Josine M., Molenaar, Joery P., Yuen, Michaela, van der Pijl, Robbert, Shen, Shengyi, Conijn, Stefan, van de Locht, Martijn, Willigenburg, Menne, Bogaards, Sylvia J.P., van Kleef, Esmee S.B., Lassche, Saskia, Persson, Malin, Rassier, Dilson E., Sztal, Tamar E., Ruparelia, Avnika A., Oorschot, Viola, Ramm, Georg, Hall, Thomas E., Xiong, Zherui, Johnson, Christopher N., Li, Frank, Kiss, Balazs, Lozano-Vidal, Noelia, Boon, Reinier A., Marabita, Manuela, Nogara, Leonardo, Blaauw, Bert, Rodenburg, Richard J., Küsters, Benno ... Ottenheijm, Coen A.C. (2024). KBTBD13 is an actin-binding protein that modulates muscle kinetics. Journal of Clinical Investigation, 134 (3). doi: 10.1172/jci179111 KBTBD13 is an actin-binding protein that modulates muscle kinetics |
2023 Journal Article Cell surface plasticity in response to shape change in the whole organismHall, Thomas E., Ariotti, Nicholas, Lo, Harriet P., Rae, James, Ferguson, Charles, Martel, Nick, Lim, Ye-Wheen, Giacomotto, Jean and Parton, Robert G. (2023). Cell surface plasticity in response to shape change in the whole organism. Current Biology, 33 (19), 4276-4284. doi: 10.1016/j.cub.2023.08.068 Cell surface plasticity in response to shape change in the whole organism |
2023 Journal Article Discovery and structural characterization of novel nanobodies targeting the Cavin1 complex essential for forming caveola membrane vesiclesGao, Ya, Tillu, Vikas A., Wu, Yeping, Rae, James, Hall, Thomas E., Chen, Kai-En, Weeratunga, Saroja, Guo, Qian, Parton, Robert G. and Collins, Brett M. (2023). Discovery and structural characterization of novel nanobodies targeting the Cavin1 complex essential for forming caveola membrane vesicles. Acta Crystallographica Section A Foundations and Advances, 79 (a2), C939-C939. doi: 10.1107/s2053273323086825 Discovery and structural characterization of novel nanobodies targeting the Cavin1 complex essential for forming caveola membrane vesicles |
2023 Journal Article Optimising the zebrafish Cre/Lox toolbox. Codon improved iCre, new gateway tools, Cre protein and guidelinesTromp, Alisha, Wang, Haitao, Hall, Thomas E., Mowry, Bryan and Giacomotto, Jean (2023). Optimising the zebrafish Cre/Lox toolbox. Codon improved iCre, new gateway tools, Cre protein and guidelines. Frontiers in Physiology, 14 1221310, 1-10. doi: 10.3389/fphys.2023.1221310 Optimising the zebrafish Cre/Lox toolbox. Codon improved iCre, new gateway tools, Cre protein and guidelines |
2023 Journal Article Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2Wu, Yeping, Lim, Ye-Wheen, Stroud, David A., Martel, Nick, Hall, Thomas E., Lo, Harriet P., Ferguson, Charles, Ryan, Michael T., McMahon, Kerrie-Ann and Parton, Robert G. (2023). Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2. Developmental Cell, 58 (5), 376-397.e4. doi: 10.1016/j.devcel.2023.02.004 Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2 |
2023 Journal Article ahctf1andkrasmutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinomaMorgan, Kimberly J., Doggett, Karen, Geng, Fansuo, Mieruszynski, Stephen, Whitehead, Lachlan, Smith, Kelly A., Hogan, Benjamin M., Simons, Cas, Baillie, Gregory J., Molania, Ramyar, Papenfuss, Anthony T., Hall, Thomas E., Ober, Elke A., Stainier, Didier Y.R., Gong, Zhiyuan and Heath, Joan Kathleen (2023). ahctf1andkrasmutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinoma. eLife, 12 e73407, 1-28. doi: 10.7554/elife.73407 ahctf1andkrasmutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinoma |
2022 Other Outputs A role for caveolar proteins in regulation of the circadian clockFonseka, Sachini, Weger, Benjamin D., Weger, Meltem, Martel, Nick, Hall, Thomas Edward, Varasteh Moradi, Shayli, Gabriel, Christian H., Kramer, Achim, Ferguson, Charles, Fernández-Rojo, Manuel A., Alexandrov, Kirill, Rawashdeh, Oliver, McMahon, Kerrie-Ann, Gachon, Frederic and Parton, Robert G. (2022). A role for caveolar proteins in regulation of the circadian clock. A role for caveolar proteins in regulation of the circadian clock |
2021 Journal Article Cavin4 interacts with Bin1 to promote T-tubule formation and stability in developing skeletal muscleLo, Harriet P., Lim, Ye-Wheen, Xiong, Zherui, Martel, Nick, Ferguson, Charles, Ariotti, Nicholas, Giacomotto, Jean, Rae, James, Floetenmeyer, Matthias, Moradi, Shayli Varasteh, Gao, Ya, Tillu, Vikas A., Xia, Di, Wang, Huang, Rahnama, Samira, Nixon, Susan J., Bastiani, Michele, Day, Ryan D., Smith, Kelly A., Palpant, Nathan J., Johnston, Wayne A., Alexandrov, Kirill, Collins, Brett M., Hall, Thomas E. and Parton, Robert G. (2021). Cavin4 interacts with Bin1 to promote T-tubule formation and stability in developing skeletal muscle. Journal of Cell Biology, 220 (12) e201905065. doi: 10.1083/jcb.201905065 Cavin4 interacts with Bin1 to promote T-tubule formation and stability in developing skeletal muscle |
2021 Journal Article Proximity dependent biotin labelling in zebrafish for proteome and interactome profilingXiong, Zherui, Lo, Harriet P., McMahon, Kerrie-Ann, Parton, Robert G. and Hall, Thomas E. (2021). Proximity dependent biotin labelling in zebrafish for proteome and interactome profiling. Bio-protocol, 11 (19) e4178, e4178. doi: 10.21769/BIOPROTOC.4178 Proximity dependent biotin labelling in zebrafish for proteome and interactome profiling |
2021 Journal Article Pipeline for generating stable large genomic deletions in zebrafish, from small domains to whole gene excisionsTromp, Alisha, Robinson, Kate, Hall, Thomas E., Mowry, Bryan and Giacomotto, Jean (2021). Pipeline for generating stable large genomic deletions in zebrafish, from small domains to whole gene excisions. G3 Genes|Genomes|Genetics, 11 (12) jkab321. doi: 10.1093/g3journal/jkab321 Pipeline for generating stable large genomic deletions in zebrafish, from small domains to whole gene excisions |
2021 Journal Article Cavin3 released from caveolae interacts with BRCA1 to regulate the cellular stress responseMcMahon, Kerrie-Ann, Stroud, David A., Gambin, Yann, Tillu, Vikas, Bastiani, Michele, Sierecki, Emma, Polinkovsky, Mark E., Hall, Thomas E., Gomez, Guillermo A., Wu, Yeping, Parat, Marie-Odile, Martel, Nick, Lo, Harriet P., Khanna, Kum Kum, Alexandrov, Kirill, Daly, Roger, Yap, Alpha, Ryan, Michael T. and Parton, Robert G. (2021). Cavin3 released from caveolae interacts with BRCA1 to regulate the cellular stress response. eLife, 10 e61407, 1-35. doi: 10.7554/elife.61407 Cavin3 released from caveolae interacts with BRCA1 to regulate the cellular stress response |
2021 Journal Article A robust method for particulate detection of a genetic tag for 3D electron microscopyRae, James, Ferguson, Charles, Ariotti, Nicholas, Webb, Richard I., Cheng, Han-Hao, Mead, James L., Riches, James D., Hunter, Dominic J.B., Martel, Nick, Baltos, Joanne, Christopoulos, Arthur, Bryce, Nicole S., Cagigas, Maria Lastra, Fonseka, Sachini, Sayre, Marcel E., Hardeman, Edna C., Gunning, Peter W., Gambin, Yann, Hall, Thomas E. and Parton, Robert G. (2021). A robust method for particulate detection of a genetic tag for 3D electron microscopy. eLife, 10 e64630, 1-17. doi: 10.7554/eLife.64630 A robust method for particulate detection of a genetic tag for 3D electron microscopy |
2021 Journal Article In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafishXiong, Zherui, Lo, Harriet P., McMahon, Kerrie-Ann, Martel, Nick, Jones, Alun, Hill, Michelle M., Parton, Robert G. and Hall, Thomas E. (2021). In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafish. eLife, 10 e64631, 1-21. doi: 10.7554/elife.64631 In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafish |
2021 Journal Article Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusionDuszyc, Kinga, Gomez, Guillermo A., Lagendijk, Anne K., Yau, Mei-Kwan, Nanavati, Bageshri Naimish, Gliddon, Briony L., Hall, Thomas E., Verma, Suzie, Hogan, Benjamin M., Pitson, Stuart M., Fairlie, David P., Parton, Robert G. and Yap, Alpha S. (2021). Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusion. Current Biology, 31 (6), 1326-1336.e5. doi: 10.1016/j.cub.2021.01.003 Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusion |
2021 Journal Article In vivo Validation of Bimolecular Fluorescence Complementation (BiFC) to Investigate Aggregate Formation in Amyotrophic Lateral Sclerosis (ALS)Don, Emily K., Maschirow, Alina, Radford, Rowan A. W., Scherer, Natalie M., Vidal-Itriago, Andrés, Hogan, Alison, Maurel, Cindy, Formella, Isabel, Stoddart, Jack J., Hall, Thomas E., Lee, Albert, Shi, Bingyang, Cole, Nicholas J., Laird, Angela S., Badrock, Andrew P., Chung, Roger S. and Morsch, Marco (2021). In vivo Validation of Bimolecular Fluorescence Complementation (BiFC) to Investigate Aggregate Formation in Amyotrophic Lateral Sclerosis (ALS). Molecular Neurobiology, 58 (5), 2061-2074. doi: 10.1007/s12035-020-02238-0 In vivo Validation of Bimolecular Fluorescence Complementation (BiFC) to Investigate Aggregate Formation in Amyotrophic Lateral Sclerosis (ALS) |
2020 Journal Article Src kinases relax adherens junctions between the neighbors of apoptotic cells to permit apical extrusionTeo, Jessica L, Tomatis, Vanesa M, Coburn, Luke, Lagendijk, Anne K, Schouwenaar, Irin-Maya, Budnar, Srikanth, Hall, Thomas E, Verma, Suzie, McLachlan, Robert W, Hogan, Benjamin M, Parton, Robert G, Yap, Alpha S and Gomez, Guillermo A (2020). Src kinases relax adherens junctions between the neighbors of apoptotic cells to permit apical extrusion. Molecular Biology of the Cell, 31 (23), 2495-2629. doi: 10.1091/mbc.E20-01-0084 Src kinases relax adherens junctions between the neighbors of apoptotic cells to permit apical extrusion |
2020 Journal Article In vivo cell biological screening identifies an endocytic capture mechanism for T-tubule formationHall, Thomas E., Martel, Nick, Ariotti, Nicholas, Xiong, Zherui, Lo, Harriet P., Ferguson, Charles, Rae, James, Lim, Ye-Wheen and Parton, Robert G. (2020). In vivo cell biological screening identifies an endocytic capture mechanism for T-tubule formation. Nature Communications, 11 (1) 3711, 3711. doi: 10.1038/s41467-020-17486-w In vivo cell biological screening identifies an endocytic capture mechanism for T-tubule formation |
2020 Book Chapter Live confocal imaging of zebrafish notochord cells under mechanical stress in vivoLim, Ye-Wheen, Lo, Harriet P., Hall, Thomas E. and Parton, Robert G. (2020). Live confocal imaging of zebrafish notochord cells under mechanical stress in vivo. Caveolae: methods and protocols. (pp. 175-187) edited by Cedric M. Blouin. New York, NY, United States: Humana Press. doi: 10.1007/978-1-0716-0732-9_16 Live confocal imaging of zebrafish notochord cells under mechanical stress in vivo |
2019 Journal Article Cellular rescue in a zebrafish model of congenital muscular dystrophy type 1AHall, T. E., Wood, A. J., Ehrlich, O., Li, M., Sonntag, C. S., Cole, N. J., Huttner, I. G., Sztal, T. E. and Currie, P. D. (2019). Cellular rescue in a zebrafish model of congenital muscular dystrophy type 1A. Npj Regenerative Medicine, 4 (1) 21, 21. doi: 10.1038/s41536-019-0084-5 Cellular rescue in a zebrafish model of congenital muscular dystrophy type 1A |
